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hhg7 / defiant

Differential methylation: Easy, Fast, Identification and ANnoTation
GNU General Public License v2.0
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annotation files #2

Open jeffinrockey opened 6 years ago

jeffinrockey commented 6 years ago

Dear David,

Could you please let me know what are the acceptable annotation formats usable with -a option. I gave a gff and later a gtf. Both of them were not recognized.?

Regards, Jeffin

hhg7 commented 6 years ago

hi Jeffin,

thanks for letting me know.

where have you downloaded the GTF? The GTF I downloaded from refFlat on http://hgdownload.cse.ucsc.edu/goldenPath/mm10/database/ and also gencode formats.

Please send me the GTF (or link where I can download) and I can debug.

-Dave