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hiclib / centurion

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usage #3

Open agyow opened 5 years ago

agyow commented 5 years ago

Hello,

Do you have any documentation on usage? I have tried running the centurion.py script (and every other .py script in the folders) with no luck. Trying to run the centurion.py script also gives an error, indicating there may be inconsistencies or missing packages. I have been unable to resolve the errors.

Thanks for your help.

Ash

NelleV commented 5 years ago

Hello, Do you have the full error message? That would be helpful in understanding what is happening. Thanks, Nelle

agyow commented 5 years ago

Hi Nelle,

Sorry for the late reply. I have tried a few other things based on the suggestions of a couple of our bioinformaticians.

Currently, here is the issue I'm running into and am unable to get passed: I'm trying to run Centurion on a Linux server, not in a physical Linux environment on my machine. My machine is a Windows. I've installed x-ming, and have tried to use that as a means of creating a GUI for generating the plots from Centurion. I can get xclock and xeyes to display, as well as R plots when I use x-ming, but when I try to run the script in the examples folder, I get an error "failure to get current screen resources". I am wondering if x-ming is a compatible program for displaying the plots, or if there is something else I should use. I can also have access to a physical Linux OS if need be, but our server has more computing resources. I am also moderately experienced with bioinformatics, but not super high in skill level, so perhaps I am just missing something. Could you tell me how you and your associates run Centurion?

Thanks for your help. Best, Ashley Yow

On Tue, Dec 4, 2018 at 6:14 PM Nelle Varoquaux notifications@github.com wrote:

Hello, Do you have the full error message? That would be helpful in understanding what is happening. Thanks, Nelle

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/hiclib/centurion/issues/3#issuecomment-444296212, or mute the thread https://github.com/notifications/unsubscribe-auth/Arfxii_zcvspO9-cZ_AQAw0mHaq27Earks5u1wHsgaJpZM4ZBnK_ .

-- Ashley Yow PhD Student Dept. of Horticultural Science NCSU Plants for Human Health Institute 600 Laureate Way Kannapolis, NC 28081