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Struggling to get VMEC to run on MacOS #11

Open killah-t-cell opened 2 years ago

killah-t-cell commented 2 years ago

I am trying to install the Python VMEC extension for Mac, but keep getting an error related to _f2py_runtime_library. The main error seems to be:

CMake Error at /private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/skbuild/resources/cmake/FindF2PY.cmake:92 (add_library):
        No SOURCES given to target: _f2py_runtime_library

But I thought f2py was a numpy thing (which I do have installed) so I'm not sure what I could do here. Any ideas?

Here's the full output:

Processing /Users/gabrielbirnbaum/VMEC2000
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Requirement already satisfied: f90wrap in /Users/gabrielbirnbaum/opt/miniconda3/lib/python3.9/site-packages (from vmec==0.0.4) (0.2.7)
Requirement already satisfied: numpy>=1.13 in /Users/gabrielbirnbaum/opt/miniconda3/lib/python3.9/site-packages (from f90wrap->vmec==0.0.4) (1.23.1)
Building wheels for collected packages: vmec
  Building wheel for vmec (pyproject.toml) ... error
  error: subprocess-exited-with-error

  × Building wheel for vmec (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [92 lines of output]
      Not searching for unused variables given on the command line.
      -- The C compiler identification is AppleClang 13.1.6.13160021
      -- Detecting C compiler ABI info
      -- Detecting C compiler ABI info - done
      -- Check for working C compiler: /usr/bin/clang - skipped
      -- Detecting C compile features
      -- Detecting C compile features - done
      -- The CXX compiler identification is AppleClang 13.1.6.13160021
      -- Detecting CXX compiler ABI info
      -- Detecting CXX compiler ABI info - done
      -- Check for working CXX compiler: /usr/bin/clang - skipped
      -- Detecting CXX compile features
      -- Detecting CXX compile features - done
      -- Configuring done
      -- Generating done
      -- Build files have been written to: /Users/gabrielbirnbaum/VMEC2000/_cmake_test_compile/build
      -- NETCDF_INC_PATH is /usr/local/include
      -- NETCDF_I value is /usr/local/include/netcdf.inc
      -- NETCDF_F value is /usr/local/lib/libnetcdff.dylib
      -- NETCDF_C value is /opt/local/lib/libnetcdf.dylib
      -- Using netcdf
      -- scalapack_lib is /usr/local/lib/libscalapack.dylib
      -- updated scalapack_lib is /usr/local/lib/libscalapack.dylib
      -- vmec linked libraries are /usr/local/lib/libnetcdff.dylib;/opt/local/lib/libnetcdf.dylib;/usr/local/lib/libscalapack.dylib;/opt/local/lib/libopenblas.dylib;/opt/local/lib/libopenblas.dylib;/opt/local/lib/libopenblas.dylib
      -- Compile definitions for preprocessor are MPI_OPT;MACOSX;NETCDF;MRC
      -- fortran_src_files is /Users/gabrielbirnbaum/VMEC2000/python/fortran_src/runvmec.f;/Users/gabrielbirnbaum/VMEC2000/python/fortran_src/reinit.f90;/Users/gabrielbirnbaum/VMEC2000/python/fortran_src/cleanup.f90;/Users/gabrielbirnbaum/VMEC2000/python/fortran_src/vmec_input.f;/Users/gabrielbirnbaum/VMEC2000/python/fortran_src/read_wout_mod.f90
      -- preprocess_fortran arguments: fpp_files, followed by /Users/gabrielbirnbaum/VMEC2000/python/fortran_src/runvmec.f;/Users/gabrielbirnbaum/VMEC2000/python/fortran_src/reinit.f90;/Users/gabrielbirnbaum/VMEC2000/python/fortran_src/cleanup.f90;/Users/gabrielbirnbaum/VMEC2000/python/fortran_src/vmec_input.f;/Users/gabrielbirnbaum/VMEC2000/python/fortran_src/read_wout_mod.f90
      -- Got fortran file: /Users/gabrielbirnbaum/VMEC2000/python/fortran_src/runvmec.f
      -- Output name: /Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/runvmec_fpp.f
      -- Got fortran file: /Users/gabrielbirnbaum/VMEC2000/python/fortran_src/reinit.f90
      -- Output name: /Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/reinit_fpp.f90
      -- Got fortran file: /Users/gabrielbirnbaum/VMEC2000/python/fortran_src/cleanup.f90
      -- Output name: /Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/cleanup_fpp.f90
      -- Got fortran file: /Users/gabrielbirnbaum/VMEC2000/python/fortran_src/vmec_input.f
      -- Output name: /Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/vmec_input_fpp.f
      -- Got fortran file: /Users/gabrielbirnbaum/VMEC2000/python/fortran_src/read_wout_mod.f90
      -- Output name: /Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/read_wout_mod_fpp.f90
      -- fpp_files is /Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/runvmec_fpp.f;/Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/reinit_fpp.f90;/Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/cleanup_fpp.f90;/Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/vmec_input_fpp.f;/Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/read_wout_mod_fpp.f90
      -- Python exten suffix expansion: .cpython-39-darwin.so
      -- f90_wrap_output_files: /Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/f90wrap_toplevel.f90/Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/f90wrap_read_wout_mod.f90/Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/f90wrap_vmec_input.f90
      -- f2py_module_name: _vmec
      -- generated_module_name: /Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build/python/_vmec.cpython-39-darwin.so
      -- Configuring done
      CMake Error at /private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/skbuild/resources/cmake/FindF2PY.cmake:92 (add_library):
        No SOURCES given to target: _f2py_runtime_library
      Call Stack (most recent call first):
        python/CMakeLists.txt:10 (find_package)

      CMake Generate step failed.  Build files cannot be regenerated correctly.
        File "/private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/skbuild/setuptools_wrap.py", line 637, in setup
          env = cmkr.configure(
        File "/private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/skbuild/cmaker.py", line 328, in configure
          raise SKBuildError(
      system.platform is darwin

      --------------------------------------------------------------------------------
      -- Trying "Ninja" generator
      --------------------------------
      ---------------------------
      ----------------------
      -----------------
      ------------
      -------
      --
      --
      -------
      ------------
      -----------------
      ----------------------
      ---------------------------
      --------------------------------
      -- Trying "Ninja" generator - success
      --------------------------------------------------------------------------------

      Configuring Project
        Working directory:
          /Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build
        Command:
          cmake /Users/gabrielbirnbaum/VMEC2000 -G Ninja -DCMAKE_INSTALL_PREFIX:PATH=/Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-install -DPYTHON_VERSION_STRING:STRING=3.9.1 -DSKBUILD:INTERNAL=TRUE -DCMAKE_MODULE_PATH:PATH=/private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/skbuild/resources/cmake -DPython3_EXECUTABLE:FILEPATH=/Users/gabrielbirnbaum/opt/miniconda3/bin/python -DPython3_INCLUDE_DIR:PATH=/Users/gabrielbirnbaum/opt/miniconda3/include/python3.9 -DPython3_LIBRARY:PATH=/Users/gabrielbirnbaum/opt/miniconda3/lib/libpython3.9.dylib -DPython3_NumPy_INCLUDE_DIRS:PATH=/private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/numpy/core/include -DPython_EXECUTABLE:FILEPATH=/Users/gabrielbirnbaum/opt/miniconda3/bin/python -DPython_INCLUDE_DIR:PATH=/Users/gabrielbirnbaum/opt/miniconda3/include/python3.9 -DPython_LIBRARY:PATH=/Users/gabrielbirnbaum/opt/miniconda3/lib/libpython3.9.dylib -DPython_NumPy_INCLUDE_DIRS:PATH=/private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/numpy/core/include -DPYTHON_EXECUTABLE:FILEPATH=/Users/gabrielbirnbaum/opt/miniconda3/bin/python -DPYTHON_INCLUDE_DIR:PATH=/Users/gabrielbirnbaum/opt/miniconda3/include/python3.9 -DPYTHON_LIBRARY:PATH=/Users/gabrielbirnbaum/opt/miniconda3/lib/libpython3.9.dylib -DPYTHON_NumPy_INCLUDE_DIRS:PATH=/private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/numpy/core/include -DCMAKE_MAKE_PROGRAM:FILEPATH=/private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/ninja/data/bin/ninja -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang -DCMAKE_Fortran_COMPILER=mpif90 -DNETCDF_INC_PATH=/usr/local/include -DNETCDF_LIB_PATH=/usr/local/Cellar -DBLA_VENDOR=OpenBLAS -DSCALAPACK_LIB_NAME=mkl_scalapack_lp64 -DBLACS_LIB_NAME=mkl_blacs_mpich_lp64 -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_OSX_DEPLOYMENT_TARGET:STRING=10.16 -DCMAKE_OSX_ARCHITECTURES:STRING=x86_64

      Traceback (most recent call last):

      An error occurred while configuring with CMake.
        Command:
          cmake /Users/gabrielbirnbaum/VMEC2000 -G Ninja -DCMAKE_INSTALL_PREFIX:PATH=/Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-install -DPYTHON_VERSION_STRING:STRING=3.9.1 -DSKBUILD:INTERNAL=TRUE -DCMAKE_MODULE_PATH:PATH=/private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/skbuild/resources/cmake -DPython3_EXECUTABLE:FILEPATH=/Users/gabrielbirnbaum/opt/miniconda3/bin/python -DPython3_INCLUDE_DIR:PATH=/Users/gabrielbirnbaum/opt/miniconda3/include/python3.9 -DPython3_LIBRARY:PATH=/Users/gabrielbirnbaum/opt/miniconda3/lib/libpython3.9.dylib -DPython3_NumPy_INCLUDE_DIRS:PATH=/private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/numpy/core/include -DPython_EXECUTABLE:FILEPATH=/Users/gabrielbirnbaum/opt/miniconda3/bin/python -DPython_INCLUDE_DIR:PATH=/Users/gabrielbirnbaum/opt/miniconda3/include/python3.9 -DPython_LIBRARY:PATH=/Users/gabrielbirnbaum/opt/miniconda3/lib/libpython3.9.dylib -DPython_NumPy_INCLUDE_DIRS:PATH=/private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/numpy/core/include -DPYTHON_EXECUTABLE:FILEPATH=/Users/gabrielbirnbaum/opt/miniconda3/bin/python -DPYTHON_INCLUDE_DIR:PATH=/Users/gabrielbirnbaum/opt/miniconda3/include/python3.9 -DPYTHON_LIBRARY:PATH=/Users/gabrielbirnbaum/opt/miniconda3/lib/libpython3.9.dylib -DPYTHON_NumPy_INCLUDE_DIRS:PATH=/private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/numpy/core/include -DCMAKE_MAKE_PROGRAM:FILEPATH=/private/var/folders/w9/y85j6mld4459qyg6n1qphmvm0000gn/T/pip-build-env-1gcs_583/overlay/lib/python3.9/site-packages/ninja/data/bin/ninja -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang -DCMAKE_Fortran_COMPILER=mpif90 -DNETCDF_INC_PATH=/usr/local/include -DNETCDF_LIB_PATH=/usr/local/Cellar -DBLA_VENDOR=OpenBLAS -DSCALAPACK_LIB_NAME=mkl_scalapack_lp64 -DBLACS_LIB_NAME=mkl_blacs_mpich_lp64 -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_OSX_DEPLOYMENT_TARGET:STRING=10.16 -DCMAKE_OSX_ARCHITECTURES:STRING=x86_64
        Source directory:
          /Users/gabrielbirnbaum/VMEC2000
        Working directory:
          /Users/gabrielbirnbaum/VMEC2000/_skbuild/macosx-10.16-x86_64-3.9/cmake-build
      Please see CMake's output for more information.
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for vmec
Failed to build vmec
ERROR: Could not build wheels for vmec, which is required to install pyproject.toml-based projects
mishapadidar commented 3 months ago

I have also run into this same issue. Has this been resolved @killah-t-cell ?