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highRES-model / highRES-Europe-WF

https://highres-europe-wf.readthedocs.io/en/latest/
MIT License
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Getting started instructions not up to date #62

Open OskarVagero opened 6 days ago

OskarVagero commented 6 days ago

As we have made some changes to the workflow, the instructions on how to get started with the model is now outdated. More specifically, this related to the conda environments.

We are saying that people should install the snakemake-minimal environment and then run the workflow with --use-conda but as we have changed to a unified highRES environment (#1), this has changed. The new rules do not have a specified conda environment that is to be used, which leads to snakemake using the environment that started the process (in this case snakemake-minimal). Snakemake-minimal does not have the necessary libraries to run certain rules.

I suggest that we do the following change:

  1. Update the README saying that users should install the envs/highres_environment as their base environment, and dropping the --use-conda argument.
  2. Alternatively, we can just update the conda environment specified for all the rules to be the _highresenvironment.
OskarVagero commented 6 days ago

Thanks to @tobiasvh15 for pointing this out.