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higlass / clodius

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
MIT License
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Natural chromosome ordering in bam files #122

Closed pkerpedjiev closed 4 years ago

pkerpedjiev commented 4 years ago

Description

What was changed in this pull request?

If no chromorder is given, this PR makes sure that that data loaded by BAM files is returned in its "natural" order (e.g. "chr1", "chr2",..., "chr10", "chr11",... "chrX", "chrY", "chrM".

Why is it necessary?

So that the behavior is consistent with bigWig and bigBed files.

Fixes #___

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