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higlass / clodius

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
MIT License
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Set up error #126

Open anilkanthi opened 4 years ago

anilkanthi commented 4 years ago

Hi,

I am trying to set up the tool for HiGlass analysis, but it gives an error when the command is run:

module load python/cpu/2.7.15 clodius

Traceback (most recent call last): File "/gpfs/share/apps/python/cpu/2.7.15-ES/bin/clodius", line 5, in from clodius.cli.aggregate import cli File "/gpfs/share/apps/python/cpu/2.7.15-ES/lib/python2.7/site-packages/clodius/cli/init.py", line 18, in from . import ( # noqa: F401 File "/gpfs/share/apps/python/cpu/2.7.15-ES/lib/python2.7/site-packages/clodius/cli/aggregate.py", line 539 f"Unable to find {line_parts[0]} in the list of chromosome sizes. " ^ SyntaxError: invalid syntax

nvictus commented 4 years ago

Looks like you are using Python 2.7. Clodius requires Python 3.

anilkanthi commented 4 years ago

Great will try that out. Thanks!