Added updated bam file fetcher - Githubissues

higlass / clodius

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

MIT License

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Added updated bam file fetcher #139

Closed pkerpedjiev closed 3 years ago

pkerpedjiev commented 3 years ago

Description

What was changed in this pull request?

Updated the BAM file fetcher to do more efficient substitution loading
Include strand, cigars, and other metadata from reads
Added tabix loader that can be estimated to estimate the size of data in a region of a BAM file

Why is it necessary?

To better display bam files

Fixes #___

Checklist

[x] Unit tests added or updated
[x] Updated CHANGELOG.md
[x] Run black .