after higlass-ingest, can't see the file in the browser

[vivekbhr]

Hello

I wanted to use higlass with my own bed file. I think I sucessfully ran the inject from inside docker using this command:

(inside docker): python higlass-server/manage.py ingest_tileset --filename TADs_domains.bed --filetype bedfile --datatype bedlike

But curl http://localhost:8989/api/v1/tileset_info/?d=$ID gives me

{"FxhE9-xlTDGZ7gIcxBHC8g": {"error": "Unknown filetype bedfile", "name": "TADs_domains.bed", "datatype": "bedlike", "coordSystem": "", "coordSystem2": ""}}

And I can't see the file on server.. What am I doing wring here?

[pkerpedjiev]

You have to aggregate the file to beddb format. See here: http://docs.higlass.io/data_preparation.html#bed-files

[vivekbhr]

Hi @pkerpedjiev . Unfortunately I am getting the same error after following the instructions there too.. Am I supposed to change the --filetype or --datatype arguments ?

Edit: I can select the track in the browser, but instead of the track I get the message unknown filetype bedfile

[pkerpedjiev]

Ah yes, if you've aggregated using clodius, you should be ingesting the beddb file using --filetype beddb --datatype bedlike

[vivekbhr]

it works now. thanks :+1: