search

higlass / higlass-docker

Builds a docker container wrapping higlass-server and higlass-client in nginx
MIT License
32 stars 14 forks source link

Zoom in view is blurry in top panel but clear in middle pannel? #174

Open yancychy opened 3 years ago

yancychy commented 3 years ago

Hi, I find a difference in the top and middle panels. When I zoom in the middle panel (https://drive.google.com/file/d/1KQR8nldISYRfB3mtkXlQIe1g2vEVN72-/view?usp=sharing), the view is clear when zoom in to single pixel. However, when I zoom in the top panel, the Hi-c data became very unclear (https://drive.google.com/file/d/1cHUaxR_8Lt4MMbfjYX-ccc7eM8ZZzcQn/view?usp=sharing). The hic data has same resolution. Thanks.

pkerpedjiev commented 3 years ago

Interesting... do you have a viewconf you could share? When I tried it, the top panel looks clear: http://higlass.io/l/?d=XkAWYIuuRPe_E2jsxTx40g

Also what version of higlass are you running? You can find out by going to http://my.higlass.instance/version.txt (example: http://higlass.io/version.txt)

yancychy commented 3 years ago

Thanks. My version is SERVER_VERSION: 1.9.0 WEB_APP_VERSION: 1.0.5 LIBRARY_VERSION: 1.4.1 HIPILER_VERSION: 1.3.1 MULTIVEC_VERSION: 0.2.0 CLODIUS_VERSION: 0.10.0 TIME_INTERVAL_TRACK_VERSION: 0.2.0-rc.2

My viewconf.json is https://drive.google.com/file/d/19PwbWUGwhVXf3W3DxSamASGz_rn_9TIq/view?usp=sharing.

My version is lower than newest. Is there a way to upgrade the version?

pkerpedjiev commented 3 years ago

Oh, you're using a rather old version. Would you mind updating to the latest docker container (v0.8.4) and trying again? You can see what the latest versions are here: http://higlass.io/version.txt

yancychy commented 3 years ago

Thanks. It works now. I used docker pull higlass/higlass-docker:v0.8.4 to update to newest.