pkerpedjiev
commented
5 years ago Uh oh, that must be a mismatch between version numbers. We updated the higlass-python API which contains the add_view call recently but must have forgotten to update higlass-manage to reflect that.
Needed Fuse installed locally after pip install (https://osxfuse.github.io/)
Installation:
"Quickly viewing a dataset"
Type Error
``` higlass-manage view hic-resolutions.cool state True temp_dir: /tmp/higlass-docker Inferred filetype: cooler Inferred datatype: matrix Traceback (most recent call last): File "/anaconda3/envs/test/bin/higlass-manage", line 10, in
sys.exit(cli())
File "/anaconda3/envs/test/lib/python3.6/site-packages/click/core.py", line 764, in __call__
return self.main(*args, **kwargs)
File "/anaconda3/envs/test/lib/python3.6/site-packages/click/core.py", line 717, in main
rv = self.invoke(ctx)
File "/anaconda3/envs/test/lib/python3.6/site-packages/click/core.py", line 1137, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/anaconda3/envs/test/lib/python3.6/site-packages/click/core.py", line 956, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/anaconda3/envs/test/lib/python3.6/site-packages/click/core.py", line 555, in invoke
return callback(*args, **kwargs)
File "/anaconda3/envs/test/lib/python3.6/site-packages/higlass_manage/view.py", line 127, in view
view = conf.add_view()
TypeError: add_view() missing 1 required positional argument: 'view'
```