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higlass / higlass

Fast, flexible and extensible genome browser.
http://higlass.io
MIT License
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Visualize GWAS loci in HiGlass #866

Closed rahmas36 closed 3 years ago

rahmas36 commented 4 years ago

Hi,

Is there a way to load GWAS loci in a BED format into HiGlass? Our lab has an interest in understanding the chromatin interactome of risk loci associated with psychiatric and neurodegenerative disorders. I would like to load this data alongside HiC maps I have generated from different cell types from human brain. Thanks!

pkerpedjiev commented 4 years ago

Does this help? http://docs.higlass.io/data_preparation.html#bed-files

rahmas36 commented 4 years ago

Thank you!

I was able to load the GWAS loci as a BED file

sehilyi commented 3 years ago

I am closing this issue since the question had been addressed, but feel free to open this if a related discussion is needed.