reference DB when using RDPclassifier

hildebra / lotus2

Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.

http://lotus2.earlham.ac.uk/

GNU General Public License v3.0

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reference DB when using RDPclassifier #64

Open CFox-Lin opened 4 months ago

CFox-Lin commented 4 months ago

Hi, If I run lotuS2 with -taxAligner 0, the option -taxAligner seems to be ignored. Am I right? From the logs, it appears that the RDP database was used: [cmd] java -Xmx1g -jar /home/lin/lotus2-master//bin/rdp_classifier_2.12/dist/classifier.jar classify -f fixrank -g 16srrna -h ./lotusOut/hierachy_cnt.tax -q ./lotusOut/OTU.fna -o ./lotusOut/tmpFiles//RDPotus.tax -c 0.1

ozkurt commented 4 months ago

Hi, If -taxAligner is set to 0, the RDP classifier option will be used.

Best, Ezgi