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hildebra
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lotus2
Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
http://lotus2.earlham.ac.uk/
GNU General Public License v3.0
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duplicated ASV sequence
#28
kingtom2016
closed
1 year ago
3
option for hashed OTU ids
#27
kingtom2016
closed
1 year ago
4
How to input demultiplexed, pre-cleaned data
#26
Xentrics
closed
1 year ago
2
Problem with example trial
#25
assemahajemlrefaei
closed
1 year ago
2
Fail to install with conda
#24
luhugerth
closed
2 years ago
2
Concatenation error generates empty mapping files
#23
arachloroptera
closed
2 years ago
2
OTU table is not generated while test run
#22
Mushahid2521
closed
2 years ago
2
dada2 Error: Can't find files for block a expected files such as
#21
sarah872
closed
1 year ago
5
Add files via upload
#20
ozkurt
closed
3 years ago
0
Always use `rm -f`
#19
nsoranzo
closed
3 years ago
0
long read processing fails
#18
uloeber
closed
3 years ago
18
using unoise as clustering
#17
pedres
closed
3 years ago
4
Fix autoMap for single read filenames not matching `$rawFileSrchStr1`
#16
nsoranzo
closed
3 years ago
0
Fix typos
#15
nsoranzo
closed
3 years ago
0
Fix create_map/autoMap for single reads
#14
nsoranzo
closed
3 years ago
0
SDM CentOS7
#13
uloeber
closed
3 years ago
5
Don't exit with code 1 if invoked with `--help`
#12
nsoranzo
closed
3 years ago
0
stops at an error -- can't open /tmpFiles//RDPotus.tax
#11
dimbakz
closed
3 years ago
3
Cleanup unused files
#10
nsoranzo
closed
3 years ago
0
Need non-interactive installation method
#9
nsoranzo
closed
3 years ago
9
V-Xtractor HMM database
#8
nsoranzo
closed
3 years ago
2
Fix missing my
#7
nsoranzo
closed
3 years ago
0
Remove mafft files
#6
nsoranzo
closed
3 years ago
0
Fix path when calling autoInstall.R
#5
nsoranzo
closed
3 years ago
0
issues with sdm and autoInstall
#4
uloeber
closed
3 years ago
1
iqtree and mafft paths in lOTUs.cfg
#3
nsoranzo
closed
3 years ago
0
minimap2 not installed by autoInstall.pl
#2
nsoranzo
closed
3 years ago
0
Fix issues when installing and running lotus2
#1
nsoranzo
closed
4 years ago
0
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