problem with make ： collect2: error: ld returned 1 exit status

hillerlab / GenomeAlignmentTools

Tools for improving the sensitivity and specificity of genome alignments

MIT License

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problem with make ： collect2: error: ld returned 1 exit status #14

Open xzk-fd opened 2 years ago

xzk-fd commented 2 years ago

Dear Michael， I am trying to install the tools following the installation instructions, but when I make for chainCleaner, chainNet and scoreChain, I get the following error:

could you give me some help, thank you.

MichaelHiller commented 2 years ago

Hi, These 'cannot find ..." are all linker errors that point to missing libraries. In your case: https://unix.stackexchange.com/questions/627517/centos-8-usr-bin-ld-cannot-find-lnsl You pls need to install libnsl2-devel

Best Michael

xzk-fd commented 2 years ago

Thank you for replying to me so quickly！ After I had installed libnsl2-devel , it displays as folloe.

Then I try patchChain and get the following error

thank you for your hlep!

MichaelHiller commented 2 years ago

Looks like the installation worked, but your system is missing csh. Can you pls ask your admin to install that? Then it should work.

xzk-fd commented 2 years ago

Thank you for your help! I had asked my admin to install csh and compat-openssl10 ,then it can work.