search

hillerlab / REforge

Regulatory Element Forward Genomics to associate transcription factor binding site divergence in regulatory elements with phenotypic differences between species
MIT License
8 stars 3 forks source link

"gmake -f nm_gnu.mak" command fails due to function in tmt1.cpp #1

Open luisacusick opened 5 years ago

luisacusick commented 5 years ago

I am trying to install REforge in linux and am getting a fatal error whenever I try to build stubb using the command "gmake -f nm_gnu.mak."

Here are the error messages: tmt1.cpp: In function ‘void trymat1()’:

tmt1.cpp:167:23: error: no match for ‘operator’ (operand types are ‘int’ and ‘GenericMatrix’) GM = M; GM += 2 GM; GM -= 3 * M; M1 = GM; Print(M1); ^~

tmt1.cpp:167:37: error: no match for ‘operator’ (operand types are ‘int’ and ‘Matrix’) GM = M; GM += 2 GM; GM -= 3 * M; M1 = GM; Print(M1); ^

Do you know what causes this error or if there's a fix?

Thank you!

Luisa

MichaelHiller commented 5 years ago

Hi,

the command that fails installs the newmat library, necessary for stubb. It's entirely unrelated to the changes to Stubb that we introduced, and therefore not really in our hands.

Installing it on centos7 or SUSE linux worked fine. We have used used gnu make 3.82 with g++ 4.8.5 (20150623).

It is possible that different compiler versions are the problem. Could you pls try the recommended Gnu G++ 3, 4 (Linux) (http://www.robertnz.net/nm11.htm#compiler)? If that does not work, then I think you have to contact the newmat author (the FAQ on newmat (http://www.robertnz.net/nmfaq.htm) did not provide further hints).

Hope that helps Michael

ghost commented 5 years ago

I am trying to install REforge in linux and am getting a fatal error whenever I try to build stubb using the command "gmake -f nm_gnu.mak."

Here are the error messages: tmt1.cpp: In function ‘void trymat1()’:

tmt1.cpp:167:23: error: no match for ‘operator’ (operand types are ‘int’ and ‘GenericMatrix’) GM = M; GM += 2 GM; GM -= 3 * M; M1 = GM; Print(M1); ^~

tmt1.cpp:167:37: error: no match for ‘operator’ (operand types are ‘int’ and ‘Matrix’) GM = M; GM += 2 GM; GM -= 3 * M; M1 = GM; Print(M1); ~^~

Do you know what causes this error or if there's a fix?

Thank you!

Luisa

Hi Luisa,

I am having the same error. Just wondering if you solved the issue?

Thank you!! Laura

luisacusick commented 5 years ago

I had a system administrator install stubb because I didn't want to mess with the compiler version. Sorry I can't be more helpful!

Luisa