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hillerlab / make_lastz_chains

Portable solution to generate genome alignment chains using lastz
MIT License
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The issue with the temporary file generation path. #20

Closed hcsun1 closed 11 months ago

hcsun1 commented 1 year ago

Hello,

when running make_chains.py on two 700MB genomes, the temporary files were stored in /dev/mapper/cl-root, which caused the storage of /dev/mapper/cl-root to be filled up and eventually resulted in the termination of make_chains.py. Could you please advise on how to modify the temporary file generation path for make_chains.py? Thank you very much for your help.

Centos7

kirilenkobm commented 11 months ago

Hello! Sorry for the long period of silence (I don't work in Michael's lab anymore, and had a lot of other things to do). Thank you for submitting the issue, I will have a look at the temporary files placement.

Connected branch: https://github.com/hillerlab/make_lastz_chains/tree/temporary_files_placement