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hiruna72 / squigualiser

Visualise and analyse nanopore (ONT) raw signals
https://hiruna72.github.io/squigualiser/
MIT License
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plot_tracks doesn't exist #39

Closed kaltinel closed 10 months ago

kaltinel commented 10 months ago

Hi,

I am trying to use the plot_tracks option and created a command_file.txt where I have 2 plot_pileup commands as instructed in your README.md.

However, I am unable to call squigualiser plot_tracks --shared_x -f ${COMMAND_FILE} -o ${OUTPUT_DIR} as I receive an error of 

usage: squigualiser [-h] [-v] {plot,reform,realign,plot_pileup} ...
squigualiser: error: argument command: invalid choice: 'plot_tracks' (choose from 'plot', 'reform', 'realign', 'plot_pileup')

Do I use a wrong version of the tool, perhaps, as I don't have this optional argument?

I would be glad to hear back from you, thank you.

hiruna72 commented 10 months ago

Hello @kaltinel,

Yes, you are using an old version. Can you download the prebuilt binaries, run the test command for the sample dataset and then try your command?

The commands are available here

kaltinel commented 10 months ago

Hi @hiruna72,

Thank you very much for your answer. I installed it from scratch and now all arguments are complete.