Running an exemple ("pywater 4lyw, A, 95") returns "HTTPError: HTTP Error 404: Not Found".
Traceback (most recent call last):
File "C:\Users\MaxPlanck_Lab1\PyMOL\lib\site-packages\pmg_tk\startup\pywater.py", line 973, in toPyWATER
File "C:\Users\MaxPlanck_Lab1\PyMOL\lib\site-packages\pmg_tk\startup\pywater.py", line 748, in FindConservedWaters
File "C:\Users\MaxPlanck_Lab1\PyMOL\lib\site-packages\pmg_tk\startup\pywater.py", line 665, in isXray
File "C:\Users\MaxPlanck_Lab1\PyMOL\lib\urllib\request.py", line 222, in urlopen
return opener.open(url, data, timeout)
File "C:\Users\MaxPlanck_Lab1\PyMOL\lib\urllib\request.py", line 531, in open
response = meth(req, response)
File "C:\Users\MaxPlanck_Lab1\PyMOL\lib\urllib\request.py", line 641, in http_response
'http', request, response, code, msg, hdrs)
File "C:\Users\MaxPlanck_Lab1\PyMOL\lib\urllib\request.py", line 569, in error
return self._call_chain(args)
File "C:\Users\MaxPlanck_Lab1\PyMOL\lib\urllib\request.py", line 503, in _call_chain
result = func(args)
File "C:\Users\MaxPlanck_Lab1\PyMOL\lib\urllib\request.py", line 649, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
Dear Developers,
Running an exemple ("pywater 4lyw, A, 95") returns "HTTPError: HTTP Error 404: Not Found".
It seems, that RCSB no longer supports legacy APIs (since 09.12.2021). https://www.rcsb.org/pdb/rest/customReport?pdbids=4lyw&customReportColumns=entityId&service=wsdisplay&format=xml&ssa=n Please, update the urllib call to make things work again.
Thanks in advance, Rościsław