hitontology / ontology

The Health IT Ontology.
https://hitontology.eu/
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Interoperability Standards #27

Closed KonradHoeffner closed 3 years ago

KonradHoeffner commented 4 years ago

Table of standards at https://docs.google.com/spreadsheets/d/170b3u_5k3ilvuVnyVFSRY-oN_tD-sY10qzkIRLVBjKU.

Should not be a datatype property but an instance with acronym and full name.

KonradHoeffner commented 4 years ago
Name Abbreviation Link description
Arden https://www.sciencedirect.com/science/article/pii/S1532046412000226 The Arden Syntax as a standardized language to represent medical knowledge can be used to express medical knowledge. Arden2ByteCode is a open source compiler for the Arden Syntax. Arden2ByteCode runs on Java Virtual Machines (JVM) and translates Arden Syntax directly to Java bytecode (JBC) executable on JVMs. It also serves as runtime environment for execution of the compiled bytecode.
ARFF Aircraft rescue and firefighting https://en.wikipedia.org/wiki/Aircraft_rescue_and_firefighting
ATC
CAM XML Validation Framework and Canonical XML dictionary-based exchange assembly - OASIS CAM The OASIS CAM toolkit provides a suite of tools for XML Validation and XML Exchange design and assembly from canonical XML dictionary components. Included in the toolkit is an XML Editor/Validation/Schema Designer along with the CAMV runtime XML validation engine. The project implements the OASIS CAM standard & NIEM IEPD approach. The visual editor allows design of exchange structures using XML components dictionaries.
CCA http://www.cpaa.org.uk/care-standards-handbook.html
CCAM
CCD Continuity of Care Document https://en.wikipedia.org/wiki/Continuity_of_Care_Document The Continuity of Care Document (CCD) specification is an XML-based markup standard intended to specify the encoding, structure, and semantics of a patient summary clinical document for exchange.
CCR Continuity of Care Record https://en.wikipedia.org/wiki/Continuity_of_Care_Record
CDA Clinical Document Architecture https://en.wikipedia.org/wiki/Clinical_Document_Architecture http://www.hl7.org/implement/standards/product_matrix.cfm?Family=CDA
CDISC Clinical Data Interchange Standards Consortium https://en.wikipedia.org/wiki/Clinical_Data_Interchange_Standards_Consortium
CDISG
Certified HIT Product https://chpl.healthit.gov/#/search
CGNS CGNS stands for CFD General Notation System https://en.wikipedia.org/wiki/CGNS
CMS 3.0 https://www.cms.gov/Regulations-and-Guidance/Guidance/CMSRecordsSchedule/index https://www.cms.gov/Regulations-and-Guidance/Regulations-and-Guidance
Continua https://www.pchalliance.org/continua-design-guidelines
CORBA
CTS2 Common Terminology Services 2 https://www.omg.org/spec/CTS2/About-CTS2/ https://wiki.hl7.org/CTS2
DICOM Digital Imaging and Communications in Medicine https://www.dicomstandard.org/
EDI Electronic data interchange https://en.wikipedia.org/wiki/Electronic_data_interchange https://docs.oracle.com/cd/E51433_01/fscm92pbr2/eng/fscm/sedi/task_EDIStandards-9f1203.html
FTP File Transfer Protocol (FTP) https://en.wikipedia.org/wiki/File_Transfer_Protocol
GDF Geographic Data Files (GDF) https://en.wikipedia.org/wiki/Geographic_Data_Files
GDT Geometric dimensioning and tolerancing https://en.wikipedia.org/wiki/Geometric_dimensioning_and_tolerancing
GSM Global System for Mobile Communications https://en.wikipedia.org/wiki/GSM
HIPAA Health Insurance Portability and Accountability Act https://www.hhs.gov/hipaa/index.html https://www.hhs.gov/hipaa/for-professionals/privacy/index.html
HL7 Health Level 7 http://www.hl7.org/
CDA
FHIR Fast Healthcare Interoperability Resources Specification https://www.hl7.org/implement/standards/product_brief.cfm?product_id=343 https://www.hl7.org/fhir/overview.html
HL7 FHIR
HPRIM Harmoniser et PRomouvoir l'Informatique Médicale http://www.interopsante.org/
HPRIM-2.1
HPRIM-XML
HSCIC-ITK
HXP Healthcare Xchange Protocol http://hxp.sourceforge.net/
ICD10 International Statistical Classification of Diseases and Related Health Problems https://www.who.int/classifications/icd/icdonlineversions/en/
ICD9 International Classification of Diseases,Ninth Revision, Clinical Modification https://en.wikipedia.org/wiki/List_of_ICD-9_codes https://www.cdc.gov/nchs/icd/icd9cm.htm
ICPC-2 International Classification of Primary Care, Second edition https://www.who.int/classifications/icd/adaptations/icpc2/en/
ICPM
IEPD Information Exchange Package Documentation (IEPD) and Justice Standards Clearinghouse https://it.ojp.gov/NISS/
IHE Integrating the Healthcare Enterprise https://www.ihe.net/
IHE-ATNA Audit Trail and Node Authentication (ATNA) https://wiki.ihe.net/index.php/Audit_Trail_and_Node_Authentication
IHE-BPPC Basic Patient Privacy Consents (BPPC) https://wiki.ihe.net/index.php/Basic_Patient_Privacy_Consents
IHE-CT Consistent Time Integration Profile https://wiki.ihe.net/index.php/Consistent_Time
IHE-EDR Emergency Department Referral (EDR) Integration Profile https://wiki.ihe.net/index.php/PCC_TF-1/EDR
IHE-MHD Mobile access to Health Documents (MHD) https://wiki.ihe.net/index.php/Mobile_access_to_Health_Documents_(MHD)
IHE-MPQ Multi-Patient Queries https://wiki.ihe.net/index.php/Multi-Patient_Queries
IHE-PAM Patient Administration Management https://wiki.ihe.net/index.php/Patient_Administration_Management
IHE-PCD Patient Care Device https://www.ihe.net/ihe_domains/patient_care_devices/
IHE-PDQ Patient Demographics Query https://wiki.ihe.net/index.php/Patient_Demographics_Query
IHE-PDQm Patient Demographics Query for Mobile (PDQm) https://wiki.ihe.net/index.php/Patient_Demographics_Query_for_Mobile_(PDQm)
IHE-PDQv3 Patient Demographics Query HL7 v3 https://wiki.ihe.net/index.php/Patient_Demographics_Query_HL7_v3
IHE-PIX Patient Identifier Cross-Referencing https://wiki.ihe.net/index.php/Patient_Identifier_Cross-Referencing
IHE-PIXm Patient Identifier Cross-Reference for Mobile (PIXm) https://wiki.ihe.net/index.php/Patient_Identifier_Cross-Reference_for_Mobile_(PIXm)
IHE-PIXv3 Patient Identifier Cross-Reference HL7 v3 https://wiki.ihe.net/index.php/Patient_Identifier_Cross-Reference_HL7_v3
IHE-QED Query for Existing Data Integration Profile (QED) https://wiki.ihe.net/index.php/PCC_TF-1/QED
IHE-RO Radiation Oncology https://wiki.ihe.net/index.php/Radiation_Oncology
IHE-SVS Sharing Value Sets https://wiki.ihe.net/index.php/Sharing_Value_Sets
IHE-XCA Cross-Community Access https://wiki.ihe.net/index.php/Cross-Community_Access
IHE-XCA-I
IHE-XCF Cross Community Fetch https://wiki.ihe.net/index.php/Cross_Community_Fetch
IHE-XCPD Cross-Community Patient Discovery https://wiki.ihe.net/index.php/Cross-Community_Patient_Discovery
IHE-XDR Cross-enterprise Document Reliable Interchange https://wiki.ihe.net/index.php/Cross-enterprise_Document_Reliable_Interchange
IHE-XDS Cross-Enterprise Document Sharing https://wiki.ihe.net/index.php/Cross-Enterprise_Document_Sharing
IHE-XDS-I
IHE-XDS-MS Cross-Enterprise Sharing of Medical Summaries (XDS-MS) Integration Profile https://wiki.ihe.net/index.php/PCC_TF-1/XDS-MS
IHE-XDS-SD XDS-SD Harmonization https://wiki.ihe.net/index.php/XDS-SD_Harmonization
IHE-XDS.a
IHE-XDS.b
IHE-XPID XAD-PID Change Management https://wiki.ihe.net/index.php/XAD-PID_Change_Management
IHE-XUA Cross-Enterprise User Assertion (XUA) https://wiki.ihe.net/index.php/Cross-Enterprise_User_Assertion_(XUA)
ISO 13606 Health informatics — Electronic health record communication — Part 1: Reference model https://www.iso.org/standard/67868.html
ISO/IEC 11756:1999 Information technology — Programming languages https://www.iso.org/standard/29268.html
KML
LOINC Logical Observation Identifiers Names and Codes (LOINC) https://loinc.org/ https://en.wikipedia.org/wiki/LOINC
MedDRA Medical Dictionary for Regulatory Activities https://en.wikipedia.org/wiki/MedDRA
MPPS Modality Performed Procedure Step Service https://www.medicalconnections.co.uk/tags/MPPS
NCPDP https://ncpdp.org/Standards-Development/Standards-Information NCPDP standards have transformed the pharmacy industry, saving billions of dollars in health system costs while increasing patient safety and quality of care. Many of our standards are named in federal legislation, including HIPAA, MMA, HITECH and Meaningful Use (MU).
NDR
NGAP
NHS
NIEM National Information Exchange Model https://www.niem.gov/
NIfTI Neuroimaging Informatics Technology Initiative https://nifti.nimh.nih.gov/
OASIS Organization for the Advancement of Structured Information Standards (OASIS) https://en.wikipedia.org/wiki/OASIS_(organization) https://www.oasis-open.org/standards
OMOP OMOP Common Data Model https://www.ohdsi.org/data-standardization/the-common-data-model/
OPCS44 National Clinical Coding Standards OPCS-4 PDF TOOLKIT
Open EHR https://en.wikipedia.org/wiki/OpenEHR openEHR is an open standard specification in health informatics that describes the management and storage, retrieval and exchange of health data in electronic health records (EHRs).
OPS Open Pluggable Specification https://en.wikipedia.org/wiki/Open_Pluggable_Specification
PN13
REST
SAML Security Assertion Markup Language https://en.wikipedia.org/wiki/Security_Assertion_Markup_Language
SCP-ECG SCP-ECG, which stands for Standard communications protocol for computer assisted electrocardiography, is a standard for ECG traces, annotations, and metadata, that specifies the interchange format and a messaging procedure for ECG cart-to-host communication and for retrieval of SCP-ECG records from the host to the ECG cart. It is defined in the joint ANSI/AAMI standard EC71:2001 and in the CEN standard EN 1064:2005.
SDMX-HD Statistical Data and Metadata Exchange (SDMX) for the Health Domain https://wiki.openmrs.org/display/docs/SDMX-HD
SMART https://en.wikipedia.org/wiki/SMART_criteria
SMTP Simple Mail Transfer Protocol https://en.wikipedia.org/wiki/Simple_Mail_Transfer_Protocol
SNOMED CT systematically organized computer processable collection of medical terms http://www.snomed.org/ https://en.wikipedia.org/wiki/SNOMED_CT
SOAP Simple Object Access Protocol https://en.wikipedia.org/wiki/SOAP
STS
SVG Scalable Vector Graphics https://en.wikipedia.org/wiki/Scalable_Vector_Graphics
TARMED Tarif Médical http://www.tarmedsuisse.ch/
UMLS Unified Medical Language System https://www.nlm.nih.gov/research/umls/index.html
WADO Web Access to DICOM Objects (WADO) https://www.dicomstandard.org/dicomweb/retrieve-wado-rs-and-wado-uri/
WSDL Web Services Description Language https://www.w3.org/TR/wsdl.html
X12
XACML eXtensible Access Control Markup Language http://docs.oasis-open.org/xacml/3.0/xacml-3.0-core-spec-os-en.html
XML Extensible Markup Language https://www.w3.org/XML/
XPath XML Path Language https://www.w3.org/TR/1999/REC-xpath-19991116/
XSD W3C XML Schema Definition Language (XSD) https://www.w3.org/TR/xmlschema11-1/
YAML YAML (a recursive acronym for "YAML Ain't Markup Language") is a human-readable data-serialization language. https://en.wikipedia.org/wiki/YAML
KonradHoeffner commented 4 years ago

Interlink Investigation

The Object Management Group has a lot of RDF resources and seems like a great candidate.

ThomasPause commented 4 years ago

dbpedia has a few classes that would partly fit the needs, so we investigated the following:

Class number of our resources found number of instances in class percentage of found to total
http://dbpedia.org/class/yago/Abstraction100002137 26 1079890 0.0024076526312865197
http://dbpedia.org/class/yago/Standard107260623 20 7291 0.274310794129749
http://dbpedia.org/class/yago/Measure100033615 20 84402 0.023696120945001304
http://dbpedia.org/class/yago/SystemOfMeasurement113577171 20 7291 0.274310794129749
http://dbpedia.org/class/yago/Communication100033020 17 171596 0.009906990838947295
http://dbpedia.org/class/yago/Message106598915 16 35659 0.04486945792086149
http://dbpedia.org/class/yago/PsychologicalFeature100023100 12 407890 0.0029419696486797913
http://dbpedia.org/class/yago/Information106634376 10 8069 0.12393109431156277
http://dbpedia.org/class/yago/Format106636806 10 1517 0.6591957811470006
http://dbpedia.org/class/yago/WikicatHealthStandards 9 54 16.666666666666668
http://dbpedia.org/class/yago/WikicatComputerFileFormats 9 658 1.3677811550151975

Wikicat Health Standards seems to be the best option so far.

But to get all the standards we need and not too much around it we will need to model it from the scratch.

KonradHoeffner commented 4 years ago

yago:WikicatHealthStandards

URI Label
http://dbpedia.org/resource/Healthcare_Services_Specification_Project Healthcare Services Specification Project
http://dbpedia.org/resource/EN_13606 EN 13606
http://dbpedia.org/resource/Mirth_Connect Mirth Connect
http://dbpedia.org/resource/ProRec ProRec
http://dbpedia.org/resource/General_Data_Format_for_Biomedical_Signals General Data Format for Biomedical Signals
http://dbpedia.org/resource/Permissible_exposure_limit Permissible exposure limit
http://dbpedia.org/resource/OpenEHR OpenEHR
http://dbpedia.org/resource/OBO_Foundry OBO Foundry
http://dbpedia.org/resource/European_Data_Format European Data Format
http://dbpedia.org/resource/Nursing_Outcomes_Classification Nursing Outcomes Classification
http://dbpedia.org/resource/HL7_Services_Aware_Interoperability_Framework HL7 Services Aware Interoperability Framework
http://dbpedia.org/resource/Recommended_exposure_limit Recommended exposure limit
http://dbpedia.org/resource/CCOW CCOW
http://dbpedia.org/resource/NCI_Metathesaurus NCI Metathesaurus
http://dbpedia.org/resource/Virtual_Medical_Record Virtual Medical Record
http://dbpedia.org/resource/ICD-10 ICD-10
http://dbpedia.org/resource/Omaha_System Omaha System
http://dbpedia.org/resource/Continuity_of_Care_Record Continuity of Care Record
http://dbpedia.org/resource/Structured_Product_Labeling Structured Product Labeling
http://dbpedia.org/resource/DICOM DICOM
http://dbpedia.org/resource/Health_Level_7 Health Level 7
http://dbpedia.org/resource/Exposure_action_value Exposure action value
http://dbpedia.org/resource/Electronic_common_technical_document Electronic common technical document
http://dbpedia.org/resource/British_Pediatric_Association_Classification_of_Diseases British Pediatric Association Classification of Diseases
http://dbpedia.org/resource/Arden_syntax Arden syntax
http://dbpedia.org/resource/Clinical_Document_Architecture Clinical Document Architecture
http://dbpedia.org/resource/Continuity_of_Care_Document Continuity of Care Document
http://dbpedia.org/resource/Nursing_Interventions_Classification Nursing Interventions Classification
http://dbpedia.org/resource/SCRIPT_(medicine) SCRIPT (medicine)
http://dbpedia.org/resource/SNOMED_CT SNOMED CT
http://dbpedia.org/resource/CEN/TC_251 CEN/TC 251
http://dbpedia.org/resource/ASC_X12 ASC X12
http://dbpedia.org/resource/Pathology_Messaging_Implementation_Project Pathology Messaging Implementation Project
http://dbpedia.org/resource/MedDRA MedDRA
http://dbpedia.org/resource/ISO/IEEE_11073 ISO/IEEE 11073
http://dbpedia.org/resource/Healthcare_Information_Technology_Standards_Panel Healthcare Information Technology Standards Panel
http://dbpedia.org/resource/KMEHR KMEHR
http://dbpedia.org/resource/HITRUST HITRUST
http://dbpedia.org/resource/OHSAS_18001 OHSAS 18001
http://dbpedia.org/resource/XDT XDT
http://dbpedia.org/resource/Cross_Enterprise_Document_Sharing Cross Enterprise Document Sharing
http://dbpedia.org/resource/Laika_(EHR_testing_framework) Laika (EHR testing framework)
http://dbpedia.org/resource/LOINC LOINC
http://dbpedia.org/resource/Clinical_Data_Interchange_Standards_Consortium Clinical Data Interchange Standards Consortium
http://dbpedia.org/resource/Standard_for_Exchange_of_Non-clinical_Data Standard for Exchange of Non-clinical Data
http://dbpedia.org/resource/Systematized_Nomenclature_of_Medicine Systematized Nomenclature of Medicine
http://dbpedia.org/resource/Read_code Read code
http://dbpedia.org/resource/Health_Informatics_Service_Architecture Health Informatics Service Architecture
http://dbpedia.org/resource/BHIE BHIE
http://dbpedia.org/resource/ELINCS ELINCS
http://dbpedia.org/resource/SDTM SDTM
http://dbpedia.org/resource/MECIF_Protocol MECIF Protocol
http://dbpedia.org/resource/Global_Medical_Device_Nomenclature Global Medical Device Nomenclature
http://dbpedia.org/resource/Multiscale_Electrophysiology_Format Multiscale Electrophysiology Format
KonradHoeffner commented 4 years ago

The HITO interoperability standard list now been processed and uploaded to the HITO SPARQL endpoint. You can browse it at https://hitontology.eu/ontology/Interoperability (is rdf:type of). External standards lists should still be investigated.

You can also see the new standard instances in the instancegenerator in the form field "interoperability", there should be 106 entries, such as https://hitontology.eu/ontology/ICD10.