[New] Paper with VP neutralization results: 10.1101/2021.10.04.463028 (Mishra21)

[MacGregorCox]

Important: check this list to see if we already have the paper: https://github.com/hivdb/covid-drdb-payload/blob/master/tables/articles.csv

What's the identifier of this new study? Please provide. (Just need one)

• DOI: [...]
• PMID: [...]
• PMCID: [...]
• URL: [https://www.biorxiv.org/content/10.1101/2021.10.04.463028v1.full]

What topic studied by this paper should be add to our database? Please describe. This paper contains neutralisation results of the B.1.617.3 variant with the ChAdOx1 (Covishield) vaccine.

Which tables/figures contain the data? Fig 2 (d) and Fig 3(d)

Additional information can help us entering this study faster. Attach files if necessary.

• What's the neutralization assay(s) and where did you find it? Ex. Pseudovirus, Virus isolate, SARS-CoV-2 recombinant. Complete list: https://github.com/hivdb/covid-drdb-payload/blob/master/tables/assays.csv Please also give the page/paragraph/table/figure number where you found this data.

• Questions related to the potency / titer / fold data:

  • What's the potency type and where did you find it? Ex. IC50/IC80/ICxx/NT50/NT80/NTxx, page X paragraph Y / line Z.
  • What's the detection threshold and where did you find it? For NT50 it usually started from 10 or 20; for IC50 it probably a number like 5ng/ml, 10ng/ml. Please give the page/paragraph/table/figure number where you found this data.

• For plasma/serum samples, when did the plasma sample collected? Ex. ~5/15/21.

• For vaccinee plasma/serum:

  • What's the vaccine dosage & shots? Ex. BNT162b2, 1st shot on ~4/1/21, 2nd shot on ~4/22/21. Vaccine complete list: https://github.com/hivdb/covid-drdb-payload/blob/master/tables/vaccines.csv

• For convalescent plasma/serum:

  • What's the infection variant? Ex. B.1, B.1.1.7, B.1.351.
  • What's the estimated time the person were infected?

Last question: can you provide us the titer/IC50/fold data in tabular form (CSV/TSV/Excel)? You can upload the file here or provide the URL. We prefer individual titer/IC50 data rather than fold or median/mean titer/IC50.

[KaimingTao]

This paper was in the database Mishra21

[philiptzou]

It seems the results already exist in our database: https://covdb.stanford.edu/search-drdb/?article=Mishra21&host=human

@MacGregorCox I'm going to close this issue but feel free to re-open it if you found any error or data missing from this study.