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hivlab / quantify-virome

quantify-virome: identify and quantify viruses from metagenomic shotgun sequences
MIT License
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MissingInputException #26

Closed tpall closed 5 years ago

tpall commented 5 years ago

(viruscount) [taavi74@rocket vs]$ snakemake --cluster "sbatch -J {cluster.name} -p {cluster.partition} -t {cluster.time} --mem {cluster.mem} --output {cluster.output} -c {cluster.cpus-per-task}" --use-conda -u ~/fastq/prjna361402/cluster.json -n -d ~/fastq/prjna361402 --keep-going Building DAG of jobs... MissingInputException in line 259 of /gpfs/hpc/home/taavi74/Projects/vs/rules/blast.smk: Missing input files for rule upload: results/SRR5558000_phages-viruses_20.csv results/SRR5558000_phages-viruses_12.csv results/SRR5558000_phages-viruses_18.csv results/SRR5558000_phages-viruses_11.csv results/SRR5558000_phages-viruses_15.csv results/SRR5558000_phages-viruses_5.csv results/SRR5558000_phages-viruses_16.csv results/SRR5558000_phages-viruses_8.csv results/SRR5558000_phages-viruses_9.csv results/SRR5558000_phages-viruses_3.csv results/SRR5558000_phages-viruses_19.csv results/SRR5558000_phages-viruses_1.csv results/SRR5558000_phages-viruses_14.csv results/SRR5558000_phages-viruses_13.csv

tpall commented 5 years ago

Fixed by 2388b1a0dda7ed7781ca59f6075701f3e491936b. RESULTS wildcard values were not updated in Snakefile.