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hkmztrk / DeepDTA

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what does Y represent in your deepDTA toy data? #10

Closed HiPracheta closed 5 years ago

HiPracheta commented 5 years ago

Hi, what does Y represent in your deepDTA toy data? I need to replicate data for my own purpose . So I need to know how many columns and rows are there? Can you give a brief description of the dataset you used for the toy data?

hkmztrk commented 5 years ago

@HiPracheta, it depends on your data (how many drugs and proteins your dataset contains). You can refer here for more information.

HiPracheta commented 5 years ago

The Y which u want us to download for training, does that also represent binding affinity? I opened it in sublime text , looks like each line is something like this : 8004 9507 c0ad 0700 0000 008c 156e 756d

does each value represent binding affinity?

hkmztrk commented 5 years ago

Y of training data stores binding affinity but is in pickle format, so the values you see are byte forms.