facing issue while doing Installation on development machine

[ap-zed]

Hi,

Appreciate your hard work on this repository/project.

We have been trying to run the project in the development machine but couldn't able to do that.

Have installed all the requirements as per the INSTALL_GUIDE.me file in the master branch.

we are getting the following error. If anyone can help with that.

com/divudi/ws/lims/Lims.java:[83,144] cannot access org.hl7.fhir.instance.model.api.ICompositeType bad class file: C:\Users\iDreams.m2\repository\ca\uhn\hapi\fhir\hapi-fhir-base\6.1.3\hapi-fhir-base-6.1.3.jar(org/hl7/fhir/instance/model/api/ICompositeType.class) class file has wrong version 55.0, should be 52.0 Please remove or make sure it appears in the correct subdirectory of the classpath.

Let me know if you need any further information.

Thanks,

[ap-zed]

Attached screenshot,

[ap-zed]

same error with a different message - Class org.hl7.fhir.r5.model.OperationOutcome has unsupported major or minor version numbers, which are greater than those found in the Java Runtime Environment version 1.8.0_191

[buddhika75]

What is the JDK version you use? Can you please try JDK 11 ?

On Thu, 20 Apr 2023 at 17:45, Andy @.***> wrote:

same error with a different message - Class org.hl7.fhir.r5.model.OperationOutcome has unsupported major or minor version numbers, which are greater than those found in the Java Runtime Environment version 1.8.0_191

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[buddhika75]

We are not getting this error, can you post the full error log.

On Thu, 20 Apr 2023 at 16:59, Andy @.***> wrote:

Hi,

Appreciate your hard work on this repository/project.

We have been trying to run the project in the development machine but couldn't able to do that.

Have installed all the requirements as per the INSTALL_GUIDE.me file in the master branch.

we are getting the following error. If anyone can help with that.

com/divudi/ws/lims/Lims.java:[83,144] cannot access org.hl7.fhir.instance.model.api.ICompositeType bad class file: C:\Users\iDreams.m2\repository\ca\uhn\hapi\fhir\hapi-fhir-base\6.1.3\hapi-fhir-base-6.1.3.jar(org/hl7/fhir/instance/model/api/ICompositeType.class) class file has wrong version 55.0, should be 52.0 Please remove or make sure it appears in the correct subdirectory of the classpath.

Let me know if you need any further information.

Thanks,

— Reply to this email directly, view it on GitHub https://github.com/hmislk/hmis/issues/529, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAJLRQXRJQ2XBKQ4PG2FEODXCEMYNANCNFSM6AAAAAAXFLP6SY . You are receiving this because you are subscribed to this thread.Message ID: @.***>

[ap-zed]

Thanks for the response, Let me try with the JDK 11, and will update you.

[ap-zed]

@buddhika75 - the project was built successfully with JDK11. now getting this error while add JDBC connection pool.

RAR5099 : Wrong class name or classpath for Datasource Object java.lang.ClassNotFoundException: com.mysql.cj.jdbc.MysqlConnectionPoolDataSource at java.net.URLClassLoader.findClass(URLClassLoader.java:382) at java.lang.ClassLoader.loadClass(ClassLoader.java:424) at java.lang.ClassLoader.loadClass(ClassLoader.java:357) at java.lang.Class.forName0(Native Method) at java.lang.Class.forName(Class.java:348) at com.sun.gjc.common.DataSourceObjectBuilder.getDataSourceObject(DataSourceObjectBuilder.java:285) at com.sun.gjc.common.DataSourceObjectBuilder.constructDataSourceObject(DataSourceObjectBuilder.java:114) at com.sun.gjc.spi.ManagedConnectionFactoryImpl.getDataSource(ManagedConnectionFactoryImpl.java:1300) at com.sun.gjc.spi.DSManagedConnectionFactory.getDataSource(DSManagedConnectionFactory.java:163) at com.sun.gjc.spi.DSManagedConnectionFactory.createManagedConnection(DSManagedConnectionFactory.java:102) at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.getUnpooledConnection(ConnectorConnectionPoolAdminServiceImpl.java:702) at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.testConnectionPool(ConnectorConnectionPoolAdminServiceImpl.java:431) at com.sun.enterprise.connectors.ConnectorRuntime.pingConnectionPool(ConnectorRuntime.java:1162) at org.glassfish.connectors.admin.cli.PingConnectionPool.execute(PingConnectionPool.java:143) at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539) at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:360) at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534) at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565) at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:360) at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556) at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464) at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109) at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846) at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722) at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:253) at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:231) at org.glassfish.admin.rest.resources.TemplateExecCommand.executeCommandLegacyFormat(TemplateExecCommand.java:157) at org.glassfish.admin.rest.resources.TemplateCommandGetResource.processGetLegacyFormat(TemplateCommandGetResource.java:75) at sun.reflect.GeneratedMethodAccessor70.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81) at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:144) at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:161) at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:160) at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:99) at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:389) at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:347) at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:102) at org.glassfish.jersey.server.ServerRuntime$2.run(ServerRuntime.java:309) at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) at org.glassfish.jersey.internal.Errors.process(Errors.java:315) at org.glassfish.jersey.internal.Errors.process(Errors.java:297) at org.glassfish.jersey.internal.Errors.process(Errors.java:267) at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:317) at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:292) at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1139) at org.glassfish.jersey.grizzly2.httpserver.GrizzlyHttpContainer.service(GrizzlyHttpContainer.java:375) at org.glassfish.admin.rest.adapter.RestAdapter$2.service(RestAdapter.java:316) at org.glassfish.admin.rest.adapter.RestAdapter.service(RestAdapter.java:179) at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:283) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:200) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:132) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:111) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:536) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:591) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:571) at java.lang.Thread.run(Thread.java:748) |#] RAR8054: Exception while creating an unpooled [test] connection for pool [ DerbyPool ], Class name is wrong or classpath is not set for : com.mysql.cj.jdbc.MysqlConnectionPoolDataSource|#] RestResponse.getResponse() gives FAILURE. endpoint = 'http://localhost:4848/management/domain/resources/ping-connection-pool.json'; attrs = '{id=DerbyPool}'|#]

[buddhika75]

It is because you have no JDBC driver. Use MySQL JDBC Driver 8.0.17. You need to add the jar file to Payara. you can do it through asadmin or by copying the files to domains lib folder and lib/extension folder. Also select MySQL8 driver in creating a connection pool.

https://youtu.be/5gqk4jFmEkU

On Fri, 21 Apr 2023 at 00:06, Andy @.***> wrote:

@buddhika75 https://github.com/buddhika75 - the project was built successfully with JDK11. now getting this error while add JDBC connection pool.

RAR5099 : Wrong class name or classpath for Datasource Object java.lang.ClassNotFoundException: com.mysql.cj.jdbc.MysqlConnectionPoolDataSource at java.net.URLClassLoader.findClass(URLClassLoader.java:382) at java.lang.ClassLoader.loadClass(ClassLoader.java:424) at java.lang.ClassLoader.loadClass(ClassLoader.java:357) at java.lang.Class.forName0(Native Method) at java.lang.Class.forName(Class.java:348) at com.sun.gjc.common.DataSourceObjectBuilder.getDataSourceObject(DataSourceObjectBuilder.java:285) at com.sun.gjc.common.DataSourceObjectBuilder.constructDataSourceObject(DataSourceObjectBuilder.java:114) at com.sun.gjc.spi.ManagedConnectionFactoryImpl.getDataSource(ManagedConnectionFactoryImpl.java:1300) at com.sun.gjc.spi.DSManagedConnectionFactory.getDataSource(DSManagedConnectionFactory.java:163) at com.sun.gjc.spi.DSManagedConnectionFactory.createManagedConnection(DSManagedConnectionFactory.java:102) at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.getUnpooledConnection(ConnectorConnectionPoolAdminServiceImpl.java:702) at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.testConnectionPool(ConnectorConnectionPoolAdminServiceImpl.java:431) at com.sun.enterprise.connectors.ConnectorRuntime.pingConnectionPool(ConnectorRuntime.java:1162) at org.glassfish.connectors.admin.cli.PingConnectionPool.execute(PingConnectionPool.java:143) at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539) at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:360) at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534) at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565) at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:360) at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556) at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464) at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109) at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846) at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722) at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:253) at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:231) at org.glassfish.admin.rest.resources.TemplateExecCommand.executeCommandLegacyFormat(TemplateExecCommand.java:157) at org.glassfish.admin.rest.resources.TemplateCommandGetResource.processGetLegacyFormat(TemplateCommandGetResource.java:75) at sun.reflect.GeneratedMethodAccessor70.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81) at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:144) at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:161) at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:160) at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:99) at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:389) at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:347) at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:102) at org.glassfish.jersey.server.ServerRuntime$2.run(ServerRuntime.java:309) at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) at org.glassfish.jersey.internal.Errors.process(Errors.java:315) at org.glassfish.jersey.internal.Errors.process(Errors.java:297) at org.glassfish.jersey.internal.Errors.process(Errors.java:267) at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:317) at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:292) at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1139) at org.glassfish.jersey.grizzly2.httpserver.GrizzlyHttpContainer.service(GrizzlyHttpContainer.java:375) at org.glassfish.admin.rest.adapter.RestAdapter$2.service(RestAdapter.java:316) at org.glassfish.admin.rest.adapter.RestAdapter.service(RestAdapter.java:179) at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:283) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:200) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:132) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:111) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:536) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:591) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:571) at java.lang.Thread.run(Thread.java:748) |#] RAR8054: Exception while creating an unpooled [test] connection for pool [ DerbyPool ], Class name is wrong or classpath is not set for : com.mysql.cj.jdbc.MysqlConnectionPoolDataSource|#] RestResponse.getResponse() gives FAILURE. endpoint = ' http://localhost:4848/management/domain/resources/ping-connection-pool.json'; attrs = '{id=DerbyPool}'|#]

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[ap-zed]

Hi,

I have been followed all the instructions but still not able to deploy the project into development machine.

Getting server time out error.

--------Server.log--------

[2023-05-01T12:29:44.173+0530] [Payara 5.2022.3] [INFO] [] [org.glassfish.admingui] [tid: _ThreadID=232 _ThreadName=admin-thread-pool::admin-listener(6)] [timeMillis: 1682924384173] [levelValue: 800] [[ Redirecting to /]]

[2023-05-01T12:29:44.504+0530] [Payara 5.2022.3] [INFO] [] [org.glassfish.admingui] [tid: _ThreadID=230 _ThreadName=admin-thread-pool::admin-listener(4)] [timeMillis: 1682924384504] [levelValue: 800] [[ Admin Console: Initializing Session Attributes...]]

[2023-05-01T12:29:59.783+0530] [Payara 5.2022.3] [SEVERE] [] [javax.enterprise.system.core] [tid: _ThreadID=143 _ThreadName=admin-thread-pool::admin-listener(1)] [timeMillis: 1682924399783] [levelValue: 1000] [[ Class org.hl7.fhir.r5.model.OperationOutcome has unsupported major or minor version numbers, which are greater than those found in the Java Runtime Environment version 1.8.0_191]]

[2023-05-01T12:30:17.370+0530] [Payara 5.2022.3] [INFO] [] [org.glassfish.admingui] [tid: _ThreadID=220 _ThreadName=admin-thread-pool::admin-listener(3)] [timeMillis: 1682924417370] [levelValue: 800] [[ GUI deployment: uploadToTempfile]]

[2023-05-01T12:30:17.376+0530] [Payara 5.2022.3] [INFO] [] [org.glassfish.admingui] [tid: _ThreadID=220 _ThreadName=admin-thread-pool::admin-listener(3)] [timeMillis: 1682924417376] [levelValue: 800] [[ uploadFileName=arogyaOhmis-3.0.0.war]]

[2023-05-01T12:30:17.517+0530] [Payara 5.2022.3] [INFO] [] [] [tid: _ThreadID=220 _ThreadName=admin-thread-pool::admin-listener(3)] [timeMillis: 1682924417517] [levelValue: 800] [[ ================== availabilityEnabled skipped ]]

---