This patch makes show.tip.labels default to FALSE, but allows it to be overridden by users, and allows users to pass other commands to plot.phylo (e.g. if they want a fan tree or something:
plot_ClaDS_phylo(tree, MAPS[-(1:3)]) # as before
plot_ClaDS_phylo(tree, MAPS[-(1:3)], type="f") # fan tree please!
plot_ClaDS_phylo(tree, MAPS[-(1:3)], type="f", show.tip.label=T) # tiplabels on a fan tree
This patch makes show.tip.labels default to FALSE, but allows it to be overridden by users, and allows users to pass other commands to plot.phylo (e.g. if they want a fan tree or something: