hmorlon / PANDA

Phylogenetic ANalyses of DiversificAtion
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Issues with installation #36

Closed dylanHco closed 3 years ago

dylanHco commented 3 years ago

Hello:

I am trying to use Clads(), but I am having some difficulties installing RPANDA (any version) on a HPCC and my own computer.

The issue appears to be with "Rmpfr". Warning message in install.packages("Rmpfr"):"installation of package 'Rmpfr' had non-zero exit status" configure: error: Header file mpfr.h not found; maybe use --with-mpfr-include=INCLUDE_PATH

Does anyone know a way around this?

Many thanks! -Dylan

JClavel commented 3 years ago

Hi Dylan,

You need the MPFR (and problably gmp) library to be installed on your machines (https://www.mpfr.org/). See the "system requirements" of the Rmpfr package (https://CRAN.R-project.org/package=Rmpfr). Maybe try to do it through conda?

Regards,

Julien The GNU MPFR Libraryhttps://www.mpfr.org/ MPFR Links. Internal links: Latest release: download – documentation – bugs – changes.; Source code: information to use the development repository.; Sample: to ... www.mpfr.org


De : dylanHco notifications@github.com Envoyé : samedi 30 janvier 2021 21:27 À : hmorlon/PANDA PANDA@noreply.github.com Cc : Subscribed subscribed@noreply.github.com Objet : [hmorlon/PANDA] Issues with installation (#36)

Hello:

I am trying to use Clads(), but I am having some difficulties installing RPANDA (any version) on a HPCC and my own computer.

The issue appears to be with "Rmpfr". Warning message in install.packages("Rmpfr"):"installation of package 'Rmpfr' had non-zero exit status" configure: error: Header file mpfr.h not found; maybe use --with-mpfr-include=INCLUDE_PATH

Does anyone know a way around this?

Many thanks! -Dylan

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