hms-dbmi / chromoscope

Interactive multiscale visualization for structural variation in human genomes
https://chromoscope.bio/
MIT License
60 stars 6 forks source link

Spanning read highlighting #112

Open dominikglodzikhms opened 1 year ago

dominikglodzikhms commented 1 year ago

The same .bam file is used, but different SV calls. Configuration: https://somatic-browser-test.s3.amazonaws.com/configs/cell.line.benchmark.json

spanning reads showing in blue: https://chromoscope.bio/?demoIndex=0&domain=1762823513.7501237-1762908325.2498758&external=https://somatic-browser-test.s3.amazonaws.com/configs/cell.line.benchmark.json

spanning reads not showing: https://chromoscope.bio/?demoIndex=1&domain=1762838440.1290703-1762893398.8709297&external=https://somatic-browser-test.s3.amazonaws.com/configs/cell.line.benchmark.json