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hms-dbmi / chromoscope

Interactive multiscale visualization for structural variation in human genomes
https://chromoscope.bio/
MIT License
60 stars 6 forks source link

Updates regarding the bi-allelic mutation status of drivers #88

Closed sehilyi closed 1 year ago

sehilyi commented 1 year ago

Current We currently display “⊙” only when “biallelic” is “yes”, and we do not display it when the value is “no” or undefined.

Changes We want to show “⊙” for bi-allelic ("yes", non-case-sensitive), “.” for NOT bi-allelic (aka. mono-allelic) ("no", non-case-sensitive), and no symbol when undefined

We also will need to clarify this in our documentation.

(cc @dominikglodzikhms @vstevensf)

vstevensf commented 1 year ago

Below (for driver NF1 in chromosome 18) are examples of the current behavior with the case sensitivity regarding the value in the biallelic column. If the "yes" is not all lowercase in the driver file (e.g. "YES", "Yes"), that inputted item will show up next to the driver name instead of the “⊙”.

Screen Shot 2023-03-01 at 4 27 25 PM Screen Shot 2023-03-01 at 4 31 46 PM
sehilyi commented 1 year ago

This is now supported by the latest commit. Please feel free to re-open if you find any issues!

Screenshot 2023-03-19 at 18 20 12