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hms-dbmi / dseqr

single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
https://docs.dseqr.com
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Determine if kallisto or salmon quantification gives better CMAP02 queries #128

Closed alexvpickering closed 4 years ago

alexvpickering commented 5 years ago

This is for benchmarking and making results-driven decisions for pipeline. Functionality for testing can piggy back off that for #127.

alexvpickering commented 4 years ago

No obvious benefit to either quantification method:

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