hms-dbmi / dseqr

single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
https://docs.dseqr.com
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allow gene-cell labeling #148

Closed alexvpickering closed 3 years ago

alexvpickering commented 4 years ago

This is something that I find myself doing manually often. I'll look at the top differentially expressed genes and then go to the Single Cell tab and see what cell types in a comparable single-cell sample express those genes.

The idea would be that you could select a single cell dataset for "gene-level" deconvolution. This would annotate genes with a cell type(s) whose expression can be accounted for by those cell type(s).