ikohane
commented
4 years ago Makes sense
On Thu, Feb 13, 2020 at 11:28 AM Alex Pickering notifications@github.com wrote:
This is something that has been implemented for integrated single-cell datasets. You essentially download a csv with the sample names that you are integrating in order to fill out a pair column (used for blocking in mixed effect model) then save and upload. I really like this pattern for the following reasons:
- much quicker to fill out sample info in excel vs shiny DT
- more maintainable than having to add new buttons/UI for new functionality (e.g. adding pair labels for bulk samples)
- can also easily add other sample annotations (e.g. gender etc)
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-- Chair, Dept. Biomedical Informatics Harvard Medical School
This is something that has been implemented for integrated single-cell datasets. You essentially download a csv with the sample names that you are integrating in order to fill out a pair column (used for blocking in mixed effect model) then save and upload. I really like this pattern for the following reasons: