move away from goana/kegga to cameraPR for pathway analysis

hms-dbmi / dseqr

single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.

https://docs.dseqr.com

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Closed alexvpickering closed 4 years ago

alexvpickering commented 4 years ago

cameraPR has a couple of advantages over goana/kegga:

faster (mainly because can supply pre-saved KEGG/GO pathway lists)
No artificial significance cut-off (goana/kegga only consider genes with FDR < 0.05)