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hms-dbmi / dseqr

single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
https://docs.dseqr.com
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Use default emptyDrops as backup #174

Closed alexvpickering closed 2 years ago

alexvpickering commented 2 years ago

This sample failed to find any non-empty droplets with the current arguments used for emptyDrops (excluding mito/ribo genes, and retain=Inf). For these cases, will try the default arguments.