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hms-dbmi / dseqr

single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
https://docs.dseqr.com
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Compatibility with Seurat v5 Objects #205

Closed afonsoguerra closed 3 months ago

afonsoguerra commented 6 months ago

Thanks for the software that is very useful for data exploration and hypothesis generation.

I am currently using the docker version, and it gives errors if I try to import a Seurat 5 object. The same data goes in fine as an SCE object. Any plans to add Seurat5 support.

Thanks!

alexvpickering commented 6 months ago

Glad to hear its useful to you @afonsoguerra!

This isn't currently a priority but I will think about it since you ask. In the meantime I would suggest either converting to SCE as you mentioned or casting Assay5 slots as Assay's (see here)

alexvpickering commented 2 months ago

@afonsoguerra - sorry for the large delay. This should work now with either Assay5 or Assay but let me know if you encounter any other issues