fix nCount_RNA and nFeature_RNA for Seurat uploads

hms-dbmi / dseqr

single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.

https://docs.dseqr.com

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fix nCount_RNA and nFeature_RNA for Seurat uploads #209

Closed alexvpickering closed 1 month ago

alexvpickering commented 1 month ago

If nCount_RNA or nFeature_RNA were missing from the Seurat object, it would lead to an error as it tried to log10(NULL). This fixes this bug and also makes it so that nCount_SCT and nFeature_SCT will be used if the RNA equivalents are not available.