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hms-dbmi / dseqr

single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
https://docs.dseqr.com
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show BioGPS data for single-cell cluster identification #65

Closed alexvpickering closed 5 years ago

alexvpickering commented 5 years ago

This is for #63 so that you can quickly see the tissue gene expression patterns for marker genes.

Note that BioGPS has more cell/tissue types (e.g. BronchialEpithelialCells) than are currently available on the source dataset GSE1133. They are the authors of that data so maybe they only deposited a subset on GEO.

The processed data as used by BioGPS is available for download.