hms-dbmi / dseqr

single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
https://docs.dseqr.com
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Seurat marker row names are not gene names #68

Closed alexvpickering closed 5 years ago

alexvpickering commented 5 years ago

This issue occurs in get_scseq_markers. After splitting by cluster, the row.names of each data.frame can have a integer appended to them based on whether or not they are a marker for multiple clusters. This is causing issues in explore_scseq_clusters where plots won't be drawn.