search

hms-dbmi / scde

R package for analyzing single-cell RNA-seq data
http://pklab.med.harvard.edu/scde
Other
170 stars 64 forks source link

Tutorials #18

Closed JEFworks closed 8 years ago

JEFworks commented 8 years ago

http://hms-dbmi.github.io/scde/pagoda.html

l1cols is missing for some reason

cell.clustering = hc, box = TRUE, labCol = NA, margins = c(0.5, 20), col.cols = rbind(l1cols)) is correct

app <- make.pagoda.app(tamr2, tam, varinfo, go.env, pwpca, clpca, col.cols = col.cols, cell.clustering = hc, title = "NPCs") should be app <- make.pagoda.app(tamr2, tam, varinfo, go.env, pwpca, clpca, col.cols = rbind(l1cols), cell.clustering = hc, title = "NPCs")

JEFworks commented 8 years ago

Fixed with commit 7f40039b29f5819256c218ba3fe52844474458da