NAMESPACE issue, compiled code not found

hms-dbmi / scde

R package for analyzing single-cell RNA-seq data

http://pklab.med.harvard.edu/scde

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NAMESPACE issue, compiled code not found #2

Closed JEFworks closed 8 years ago

JEFworks commented 9 years ago

Error shared object ‘plyr.so’ not found when running clpca <- pagoda.gene.clusters(varinfo,trim=7.1/ncol(varinfo$mat),n.clusters=150,n.cores=n.cores,plot=T)

JEFworks commented 9 years ago

Additional NAMESPACE issues:

Without loading WGCNA, I get the following error when running knn.error.models

 Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
  there is no package called ‘impute’

WGCNA not currently required but should remain optional. Need to figure out where this dependency is arising.