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hms-dbmi / scde

R package for analyzing single-cell RNA-seq data
http://pklab.med.harvard.edu/scde
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biocParallel error when installing #37

Open billytcl opened 7 years ago

billytcl commented 7 years ago

R 3.2.5

Installing from devtools gives me this error:

Installing BiocParallel '/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet CMD \ INSTALL '/tmp/RtmpBv2SbE/devtools881174ee69a1/BiocParallel' \ --library='/home/billylau/R/x86_64-pc-linux-gnu-library/3.2' --install-tests

  • installing source package ‘BiocParallel’ ... R inst tests preparing package for lazy loading ** help * installing help indices building package indices ** testing if installed package can be loaded Error : .onLoad failed in loadNamespace() for 'BiocParallel', details: call: makePSOCKcluster(spec, ...) error: numeric 'names' must be >= 1 Error: loading failed Execution halted ERROR: loading failed
  • removing ‘/home/billylau/R/x86_64-pc-linux-gnu-library/3.2/BiocParallel’ Error: Command failed (1)

The same thing happens when directly instaling with biocLite.

Has anyone seen this problem before?