I have tried to run scde.error.models but all the time i achieve object VR_set_net not found error:
cross-fitting cells.
number of pairs: 435
number of pairs: 351
total number of pairs: 786
cross-fitting 786 pairs:
building individual error models.
adjusting library size based on 2000 entries
fitting WT, none models:
1 : CHFY019_S1_L012
Classification: weighted
Error in nnet::nnet.default(x, y, w, mask = mask, size = 0, skip = TRUE, :
object 'VR_set_net' not found
2 : CHFY020_S2_L012
Classification: weighted
Error in nnet::nnet.default(x, y, w, mask = mask, size = 0, skip = TRUE, :
object 'VR_set_net' not found
I have tried to run
scde.error.modelsbut all the time i achieve objectVR_set_netnot found error:cross-fitting cells. number of pairs: 435 number of pairs: 351 total number of pairs: 786 cross-fitting 786 pairs: building individual error models. adjusting library size based on 2000 entries fitting WT, none models: 1 : CHFY019_S1_L012 Classification: weighted Error in nnet::nnet.default(x, y, w, mask = mask, size = 0, skip = TRUE, : object 'VR_set_net' not found 2 : CHFY020_S2_L012 Classification: weighted Error in nnet::nnet.default(x, y, w, mask = mask, size = 0, skip = TRUE, : object 'VR_set_net' not found
How can i fix it?