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hms-dbmi / scde

R package for analyzing single-cell RNA-seq data
http://pklab.med.harvard.edu/scde
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Memory requirement #63

Open DesmondYuan opened 6 years ago

DesmondYuan commented 6 years ago

Hi folks,

I'm wondering if there is an estimation of how large the memory/ how long SCDE would need for running scde.error.models? It appears to me that even 60G is not enough.

I'm using a matrix with 10k genes by 10k cells.

Thanks Love you Bo

DesmondYuan commented 6 years ago

200Gb for 5k cells also doesn't work.