Is there an equivalent pagoda.show.pathways() function for looking at clusters and not pathways

hms-dbmi / scde

R package for analyzing single-cell RNA-seq data

http://pklab.med.harvard.edu/scde

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Is there an equivalent pagoda.show.pathways() function for looking at clusters and not pathways #81

Open jpcartailler opened 4 years ago

jpcartailler commented 4 years ago

In short, I'd like to do something like:

pagoda.show.pathways(c("GO:0044421"), varinfo, go.env, cell.clustering = hc, margins = c(1,5), show.cell.dendrogram = TRUE, showRowLabels = TRUE, showPC = TRUE)

but for clusters shown in the pagoda.view.aspects() plot, such as genecluster.26

Thanks! JP