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hms-dbmi / scde

R package for analyzing single-cell RNA-seq data
http://pklab.med.harvard.edu/scde
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fisher.test error #86

Open marctormo opened 4 years ago

marctormo commented 4 years ago

Hi,

I'm getting an error while running scde.expression.difference and I don't know how to solve it:

ediff.batch <- scde.expression.difference(o.ifm.all, cd, o.prior, groups = groups, batch = placa, n.randomizations = 100, n.cores = 4, return.posteriors = TRUE, verbose = 1) Error in fisher.test(bgti) : FEXACT error 7(location). LDSTP=18630 is too small for this problem, (pastp=31.6012, ipn_0:=ipoin[itp=394]=1202, stp[ipn_0]=48.0325). Increase workspace or consider using 'simulate.p.value=TRUE

Do you have any idea? Many thanks!