search

hms-dbmi / vizarr

A minimal Zarr image viewer based on Viv.
https://hms-dbmi.github.io/vizarr/?source=https://minio-dev.openmicroscopy.org/idr/v0.3/idr0062-blin-nuclearsegmentation/6001240.zarr
MIT License
114 stars 16 forks source link

colab notebook not working with zarr #152

Closed pieper closed 2 years ago

pieper commented 2 years ago

I tried the colab link and I got the zarr error shown in the first image below indicating that the code might work with an earlier version of zarr.

So I changed the first line to !pip install imjoy zarr==2.10 and was able to load zarr, but ended up with a blank screen as shown in the second image.

image

image

manzt commented 2 years ago

Thanks for point this out. I will modify the MandelbrotStore so that it is compatible with the latest zarr. With zarr==2.10 I was able to get the notebook to work. You need to drag the bottom right corner of the blue bar to expand the window. Seems like this was a change introduced in imjoy, where there is no default window size.

image
pieper commented 2 years ago

thanks for the quick response! Yes, it works to resize the window 👍