Closed jcaxle closed 1 month ago
Hi there, thanks for opening the issue. The imjoy plugin can be a bit combersome to get started. I've been working on an official Jupyter integration for vizarr with anywidget #176. I published a very initial version to PyPI, which you should be able to try out:
pip install vizarr
import vizarr
import zarr
import numpy as np
viewer = vizarr.Viewer()
viewer.add_image(source=zarr.open("path/to/store.zarr"), name="image")
viewer.add_image(source=np.random.randint(0, 255, (1024, 1024), dtype=np.uint8), name="noise")
viewer
Note: The API is very new and subject to change, but hopefully usable for viewing your multiscale zarr data.
cc: @joshmoore, towards a general web-based zarr viewer in Jupyter
I saw that Vizarr support the visualization of local zarr files through its imjoy_plugin. I want to visualize the following zarr file; however, I haven't had any luck with the plugin:
How would I be able to load this zarr file through the plugin?