version in ubuntu - Githubissues

chnpenny commented 5 years ago

I installed Hmsc with the three lines code given in this repo. But my Hmsc version in R is '‘0.4.1.0' not '0.4.3.2'. I have ubuntu 18.04. Is that possible to solve this problem? Thanks a lot!

gtikhonov commented 5 years ago

Not very sure what could be the source of such issue. Could you post here the output of sessionInfo() call?

chnpenny commented 5 years ago

Sure! Thanks! R version 3.4.4 (2018-03-15) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.3 LTS

Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1

locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] parallel grid stats graphics grDevices utils datasets [8] methods base

other attached packages: [1] bit64_0.9-7 bit_1.1-14 forcats_0.2.0 stringr_1.4.0
[5] dplyr_0.8.0.1 purrr_0.2.4 readr_1.1.1 tidyr_0.8.0
[9] tibble_2.1.3 tidyverse_1.2.1 sjmisc_2.8.1 Hmsc_0.4.1.0
[13] snow_0.4-3 truncnorm_1.0-8 tensorA_0.36.1 phytools_0.6-99 [17] ggplot2_3.2.1 pROC_1.15.3 pdist_1.2 nnet_7.3-12
[21] mvtnorm_1.0-7 MCMCpack_1.4-4 MASS_7.3-50 coda_0.19-3
[25] Matrix_1.2-14 fields_9.8-3 maps_3.3.0 spam_2.2-2
[29] dotCall64_1.0-0 BayesLogit_0.6 ape_5.3 abind_1.4-5

loaded via a namespace (and not attached): [1] httr_1.3.1 jsonlite_1.5 modelr_0.1.1
[4] gtools_3.8.1 assertthat_0.2.1 expm_0.999-4
[7] animation_2.6 cellranger_1.1.0 numDeriv_2016.8-1.1
[10] pillar_1.4.2 backports_1.1.4 lattice_0.20-38
[13] quantreg_5.51 glue_1.3.1 quadprog_1.5-7
[16] phangorn_2.5.5 rvest_0.3.2 colorspace_1.4-1
[19] plyr_1.8.4 pkgconfig_2.0.2 broom_0.5.1
[22] SparseM_1.77 haven_2.1.1 scales_1.0.0
[25] MatrixModels_0.4-1 combinat_0.0-8 generics_0.0.2
[28] sjlabelled_1.1.0 withr_2.1.2 lazyeval_0.2.2
[31] cli_1.1.0 mnormt_1.5-5 magrittr_1.5
[34] crayon_1.3.4 readxl_1.0.0 mcmc_0.9-6
[37] nlme_3.1-137 xml2_1.2.0 tools_3.4.4
[40] hms_0.4.1 munsell_0.5.0 plotrix_3.7-5
[43] compiler_3.4.4 clusterGeneration_1.3.4 rlang_0.4.0.9002
[46] rstudioapi_0.7 igraph_1.2.4.1 gtable_0.3.0
[49] R6_2.4.0 lubridate_1.7.2 fastmatch_1.1-0
[52] insight_0.4.1 stringi_1.4.3 Rcpp_1.0.2
[55] scatterplot3d_0.3-41 tidyselect_0.2.5

jarioksa commented 4 years ago

@chnpenny : is this still an actual problem, or has this been solved with the CRAN release of Hmsc?

taddallas commented 4 years ago

I am unable to reproduce error with new Hmsc CRAN release under similar OS/environment. How are we doing our semantic versioning to be skipping around from 0.4.1.x to 3.0-4?

> sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.3 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] Hmsc_3.0-4  coda_0.19-3

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.2         plyr_1.8.4         compiler_3.6.1     pillar_1.4.2      
 [5] tools_3.6.1        statmod_1.4.32     dotCall64_1.0-0    tibble_2.1.3      
 [9] gtable_0.3.0       nlme_3.1-141       lattice_0.20-38    pkgconfig_2.0.2   
[13] rlang_0.4.0        Matrix_1.2-17      parallel_3.6.1     SparseM_1.77      
[17] mvtnorm_1.0-11     spam_2.3-0         dplyr_0.8.3        pROC_1.15.3       
[21] MatrixModels_0.4-1 fields_9.9         maps_3.3.0         pdist_1.2         
[25] BayesLogit_2.1     grid_3.6.1         nnet_7.3-12        tidyselect_0.2.5  
[29] glue_1.3.1         R6_2.4.0           ggplot2_3.2.1      purrr_0.3.3       
[33] magrittr_1.5       scales_1.0.0       mcmc_0.9-6         MASS_7.3-51.4     
[37] abind_1.4-5        assertthat_0.2.1   ape_5.3            colorspace_1.4-1  
[41] quantreg_5.51      MCMCpack_1.4-4     lazyeval_0.2.2     munsell_0.5.0     
[45] truncnorm_1.0-8    crayon_1.3.4       FNN_1.1.3

hmsc-r / HMSC

version in ubuntu #20