search

hoangtn / CNVrd2

CNVrd2
3 stars 3 forks source link

Reference Genome for correctGC #4

Closed ramayyala closed 6 years ago

ramayyala commented 6 years ago

I am trying to use a different reference genome for the correctGC rather than the default human reference genome UCSC hg19 . I have looked through the pdf manual which says to do so I have to supply my own reference genome. How do i that? There doesn't seem to be a clear input command for in the CNVrd2 function. Also what is the file format for the reference genome/how did you compile your reference genome?

hoangtn commented 6 years ago

Hi! You can learn how to build genome packages from Bioconductor: http://bioconductor.org/packages/release/bioc/html/BSgenome.html Best, H