This is a major update including the bug fixing of the whole pipeline that was initially done in the shell version.
The major change is the division of large ILPs into smaller sub-ILPs followed by merging the single files again for the revised combine script.
The nextflow pipeline is running with the new code on my local machine.
Unfortunately, I was not able to test the bash version (got errors during install that I manually solved but then the ribap.sh also failed at certain steps. I was not eager to continue bug fixing)
This is a major update including the bug fixing of the whole pipeline that was initially done in the shell version.
The major change is the division of large ILPs into smaller sub-ILPs followed by merging the single files again for the revised combine script.
The nextflow pipeline is running with the new code on my local machine.
Unfortunately, I was not able to test the bash version (got errors during install that I manually solved but then the
ribap.shalso failed at certain steps. I was not eager to continue bug fixing)