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hoelzer-lab / rnaflow

A simple RNA-Seq differential gene expression pipeline using Nextflow
GNU General Public License v3.0
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Use `run_busco` instead of `run_BUSCO.py` #138

Open dakehero opened 3 years ago

dakehero commented 3 years ago

When you are installing BUSCO version 3.0.2 with conda, it will automatically create a symbol link run_busco to run_BUSCO.py in {busco_env_dir}/bin. To make it work in conda env, just use run_busco instead of run_BUSCO.py

hoelzer commented 3 years ago

Hi @dakehero, thanks for the hint!

You are referring to https://github.com/hoelzer-lab/rnaflow/blob/master/modules/busco.nf#L24

Currently, we only use BUSCO w/ a pre-build Docker container and do not support conda. I did this, bc/ I run into issues with the conda env. But maybe this is exactly solved by what you proposed.

We will give it a try!