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hoelzer / mgnify-lr

Evaluation of long-read support for the MGnify pipeline
GNU General Public License v3.0
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estimated gsize set to 1m when below 1 #10

Closed hoelzer closed 4 years ago

hoelzer commented 4 years ago

At the moment, when gess reports a genome size smaller than 1 Mbp the flye process sets this to 1m.

E.g. gess reports

0.65m

then flye process sets this to

1m

This is not smart and should be changed to actually use the gess estimation except it is

0.00

(what can actually happen for a small test data set)

hoelzer commented 4 years ago

fixed this, now uses estimated genome sizes below 1 such as 0.24 M